Table 1 Characteristics of RFL genes and predicted properties of RFL proteins in three Gossypium species
Gene ID | Chromosome number | Location | Intron | Length /aa | Domain number | Subcellular location |
|---|---|---|---|---|---|---|
RFL genes in G. hirsutum | ||||||
 Gh_A02G0346 | A02 | 4061961-4063892(−) | 0 | 643 | 12 | Chloroplast |
 Gh_A03G0085 | A03 | 1310395-1312206(+) | 0 | 603 | 12 | Chloroplast |
 Gh_A04G0298 | A04 | 6938035-6939906(+) | 1 | 538 | 14 | Signal peptide |
 Gh_A04G0299 | A04 | 6958902-6961157(+) | 1 | 740 | 17 | Chloroplast |
 Gh_A04G0308 | A04 | 7067031-7068902(+) | 0 | 623 | 12 | Signal peptide |
 Gh_A04G1306 | scaffold756_A04 | 11713-13662(+) | 0 | 649 | 15 | _ |
 Gh_A04G1307 | scaffold756_A04 | 42960-44756(+) | 0 | 598 | 13 | Mitochondrial |
 Gh_A08G1858 | A08 | 99291747-99293615(−) | 1 | 538 | 14 | Mitochondrial |
 Gh_A08G1886 | A08 | 99594679-99596448(+) | 1 | 557 | 14 | Signal peptide |
 Gh_A09G0071 | A09 | 1545143-1547526(−) | 1 | 443 | 12 | _ |
 Gh_A09G0099 | A09 | 2441359-2443299(+) | 0 | 646 | 14 | Chloroplast |
 Gh_A09G1959 | A09 | 72667483-72669399(−) | 0 | 638 | 10 | _ |
 Gh_A10G1153 | A10 | 58877471-58931193(−) | 2 | 867 | 20 | Signal peptide |
 Gh_A10G1192 | A10 | 62428148-62429707(+) | 0 | 519 | 13 | Mitochondrial |
 Gh_A10G1204 | A10 | 62755821-62757800(−) | 2 | 485 | 12 | _ |
 Gh_A10G1206 | A10 | 62766997-62769312(−) | 1 | 726 | 18 | _ |
 Gh_A11G1174 | A11 | 14344990-14346882(+) | 1 | 558 | 12 | Mitochondrial |
 Gh_D02G0409 | D02 | 5265341-5267272(−) | 0 | 643 | 12 | Chloroplast |
 Gh_D03G1566 | D03 | 44987228-44989030(−) | 0 | 600 | 12 | Mitochondrial |
 Gh_D05G3346 | D05 | 54230340-54232205(−) | 0 | 621 | 12 | Chloroplast |
 Gh_D05G3356 | D05 | 54344042-54346277(−) | 1 | 602 | 13 | _ |
 Gh_D05G3362 | D05 | 54500616-54502460(−) | 0 | 614 | 14 | _ |
 Gh_D05G3380 | D05 | 54864359-54866280(+) | 1 | 557 | 13 | _ |
 Gh_D05G3389 | D05 | 55014049-55028124(−) | 6 | 749 | 14 | _ |
 Gh_D05G3392 | D05 | 55066970-55068568(−) | 0 | 532 | 13 | Signal peptide |
 Gh_D08G2249 | D08 | 62092399-62094342(+) | 0 | 647 | 15 | Mitochondrial |
 Gh_D09G0096 | D09 | 2499241-2501169(+) | 0 | 642 | 14 | Chloroplast |
 Gh_D09G2163 | D09 | 48772802-48774718(−) | 0 | 638 | 10 | _ |
 Gh_D10G1292 | D10 | 23933234-23935420(+) | 0 | 728 | 18 | _ |
 Gh_D10G1294 | D10 | 23946799-23948358(+) | 0 | 519 | 14 | _ |
 Gh_D10G1307 | D10 | 24224714-24226273(−) | 0 | 519 | 13 | Mitochondrial |
 Gh_D10G1342 | D10 | 25844049-25845929(+) | 0 | 626 | 13 | Mitochondrial |
 Gh_D10G1344 | D10 | 25875652–25882818(+) | 6 | 906 | 18 | _ |
 Gh_D11G1331 | D11 | 12830305-12832155(+) | 0 | 616 | 12 | Chloroplast |
 Gh_D13G0526 | D13 | 6880247-6881917(+) | 0 | 556 | 14 | _ |
RFL genes in G. arboreum | ||||||
 Cotton_A_08373 | Ca13 | 57501074-57503005(+) | 0 | 643 | 13 | Chloroplast |
 Cotton_A_14708 | Ca10 | 102602256-102604196(−) | 0 | 646 | 14 | Chloroplast |
 Cotton_A_14743 | Ca10 | 103472578-103474212(+) | 0 | 544 | 12 | _ |
 Cotton_A_16847 | Ca7 | 9513817-9515736(−) | 1 | 573 | 13 | _ |
 Cotton_A_18522 | Ca7 | 61596824-61598692(−) | 0 | 622 | 14 | Chloroplast |
 Cotton_A_23070 | Ca8 | 78350187-78351653(+) | 0 | 488 | 13 | Signal peptide |
 Cotton_A_23084 | Ca8 | 78693577-78695556(−) | 0 | 659 | 15 | Mitochondrial |
 Cotton_A_24432 | Ca8 | 85527702-85529582(−) | 0 | 626 | 13 | Mitochondrial |
 Cotton_A_24724 | Ca10 | 34691224-34693117(−) | 1 | 630 | 10 | Mitochondrial |
 Cotton_A_26557 | Ca3 | 23320169-23321491(−) | 0 | 440 | 10 | Signal peptide |
 Cotton_A_26837 | Ca5 | 136263118-136264365(+) | 0 | 415 | 11 | _ |
 Cotton_A_29292 | Ca6 | 90346627-90348504(−) | 0 | 625 | 13 | Chloroplast |
 Cotton_A_29299 | Ca6 | 90193385-90195133(−) | 0 | 582 | 14 | _ |
 Cotton_A_29300 | Ca6 | 90149515-90151278(−) | 0 | 587 | 12 | Mitochondrial |
 Cotton_A_30591 | Ca4 | 116495782-116497152(+) | 0 | 456 | 11 | Mitochondrial |
 Cotton_A_33520 | Ca6 | 91413647-91415518(+) | 0 | 623 | 12 | Mitochondrial |
RFL genes in G. raimondii | ||||||
 Cotton_D_gene_10000174 | scaffold587 | 10218-12381(+) | 1 | 698 | 15 | Chloroplast |
 Cotton_D_gene_10000410 | scaffold520 | 19372–20826(−) | 0 | 484 | 13 | Signal peptide |
 Cotton_D_gene_10000446 | scaffold516 | 21891-23345(+) | 0 | 484 | 13 | Signal peptide |
 Cotton_D_gene_10000448 | scaffold516 | 47453-49639(+) | 0 | 540 | 11 | Chloroplast |
 Cotton_D_gene_10000451 | scaffold516 | 90985-92439(+) | 0 | 484 | 13 | Signal peptide |
 Cotton_D_gene_10000822 | scaffold512 | 92947-94929(+) | 0 | 660 | 13 | Chloroplast |
 Cotton_D_gene_10000826 | scaffold512 | 134156-135944(+) | 1 | 564 | 10 | Chloroplast |
 Cotton_D_gene_10002529 | scaffold461 | 131009-132463(−) | 0 | 484 | 13 | Signal peptide |
 Cotton_D_gene_10003142 | Chr9 | 41720023-41721747(+) | 1 | 520 | 9 | Signal peptide |
 Cotton_D_gene_10003980 | scaffold288 | 253425-255650(−) | 0 | 623 | 14 | Mitochondrial |
 Cotton_D_gene_10003981 | scaffold288 | 259126-260817(−) | 1 | 479 | 11 | _ |
 Cotton_D_gene_10004373 | scaffold326 | 137744-139303(−) | 1 | 519 | 13 | Mitochondrial |
 Cotton_D_gene_10005258 | Chr5 | 742735-745217(+) | 0 | 641 | 12 | Chloroplast |
 Cotton_D_gene_10007940 | Chr4 | 2510485-2512428(+) | 0 | 647 | 15 | Mitochondrial |
 Cotton_D_gene_10009676 | Chr7 | 41367207-41369072(−) | 0 | 621 | 12 | Chloroplast |
 Cotton_D_gene_10009740 | Chr3 | 1451913-1453283(+) | 0 | 456 | 10 | Mitochondrial |
 Cotton_D_gene_10013435 | scaffold333 | 1235526-1237394(−) | 0 | 622 | 12 | Chloroplast |
 Cotton_D_gene_10013437 | scaffold333 | 1247144-1249009(−) | 0 | 621 | 12 | Mitochondrial |
 Cotton_D_gene_10014531 | scaffold324 | 965465-968260(+) | 1 | 579 | 13 | _ |
 Cotton_D_gene_10014534 | scaffold324 | 998554-1000283(+) | 1 | 541 | 13 | _ |
 Cotton_D_gene_10021157 | Chr6 | 45498703-45500927(−) | 0 | 638 | 10 | _ |
 Cotton_D_gene_10026507 | Chr11 | 23161755-23163734(+) | 0 | 659 | 15 | Mitochondrial |
 Cotton_D_gene_10027032 | Chr6 | 2797685-2799676(+) | 1 | 555 | 12 | _ |
 Cotton_D_gene_10027066 | Chr6 | 2028765-2030705(−) | 0 | 646 | 14 | Mitochondrial |