Development and application of perfect SSR markers in cotton

WU, Yuzhen; HUANG, Longyu; ZHOU, Dayun; FU, Xiaoqiong; LI, Chao; WEI, Shoujun; PENG, Jun; KUANG, Meng

doi:10.1186/s42397-020-00066-0

Journal of Cotton Research

Table 2 Information on 60 perfect SSR primers

From: Development and application of perfect SSR markers in cotton

Primer No.	Primer name	Map location	Fluorescent type	Allelic range	PIC value
PC01	CCRI001	A1	NED	303–313	0.61
PC02	CCRI002	A2	FAM	281–291	0.43
PC03	CCRI003	A3	VIC	173–183	0.64
PC04	CCRI004	A4	VIC	367–373	0.46
PC05	CCRI005	A5	PET	268–276	0.60
PC06	CCRI006	A6	PET	326–355	0.58
PC07	CCRI007	A6	NED	256–288	0.60
PC08	CCRI008	A7	VIC	140–160	0.56
PC09	CCRI009	A8	NED	208–216	0.38
PC10	CCRI010	A9	PET	361–369	0.35
PC11	CCRI011	A10	FAM	386–397	0.56
PC12	CCRI012	A11	FAM	293–311	0.68
PC13	CCRI013	A12	NED	210–219	0.63
PC14	CCRI014	A12	VIC	339–354	0.52
PC15	CCRI015	A13	VIC	233–247	0.59
PC16	CCRI016	D1	NED	188–196	0.62
PC17	CCRI017	D2	PET	184–196	0.80
PC18	CCRI018	D3	FAM	238–248	0.60
PC19	CCRI019	D3	VIC	225–236	0.50
PC20	CCRI020	D4	PET	304–311	0.57
PC21	CCRI021	D5	VIC	189–203	0.65
PC22	CCRI022	D6	PET	218–228	0.44
PC23	CCRI023	D7	FAM	178–184	0.57
PC24	CCRI024	D7	PET	199–205	0.54
PC25	CCRI025	D8	NED	235–244	0.46
PC26	CCRI026	D10	FAM	172–193	0.47
PC27	CCRI027	D11	FAM	334–340	0.56
PC28	CCRI028	D11	PET	244–262	0.53
PC29	CCRI029	D12	PET	161–175	0.70
PC30	CCRI030	D13	FAM	215–224	0.54
PC31	CCRI031	A1	NED	218–221	0.50
PC32	CCRI032	A1	FAM	218–223	0.50
PC33	CCRI033	A3	NED	335–344	0.27
PC34	CCRI034	A3	FAM	303–307	0.37
PC35	CCRI035	A4	NED	339–349	0.26
PC36	CCRI036	A5	PET	256–277	0.48
PC37	CCRI037	A7	VIC	286–305	0.39
PC38	CCRI038	A7	VIC	292–297	0.47
PC39	CCRI039	A8	FAM	249–255	0.20
PC40	CCRI040	A9	NED	221–226	0.28
PC41	CCRI041	A10	FAM	291–305	0.46
PC42	CCRI042	A11	FAM	166–172	0.56
PC43	CCRI043	A11	VIC	300–332	0.34
PC44	CCRI044	A12	FAM	381–384	0.40
PC45	CCRI045	A13	VIC	226–236	0.45
PC46	CCRI046	A13	VIC	192–198	0.34
PC47	CCRI047	D1	VIC	215–219	0.47
PC48	CCRI048	D1	PET	312–324	0.26
PC49	CCRI049	D2	PET	214–226	0.43
PC50	CCRI050	D2	FAM	331–361	0.48
PC51	CCRI051	D4	PET	313–320	0.47
PC52	CCRI052	D5	PET	243–259	0.46
PC53	CCRI053	D5	PET	173–178	0.46
PC54	CCRI054	D6	PET	238–252	0.38
PC55	CCRI055	D7	FAM	261–272	0.43
PC56	CCRI056	D8	NED	253–266	0.44
PC57	CCRI057	D10	NED	298–304	0.45
PC58	CCRI058	D10	FAM	219–227	0.39
PC59	CCRI059	D12	PET	298–312	0.44
PC60	CCRI060	D13	NED	222–236	0.42

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