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Table 4 An overview of genetic diversity studies in cotton using molecular markers

From: Cotton germplasm improvement and progress in Pakistan

Marker

Country

Population type

Size

References

 

USA

16 near-homozygous elite cotton genotypes

80 RAPD primers

Tatineni et al. 1996

Pakistan

31 Gossypium species, 3 subspecies and 1 interspecific hybrid18 cotton varieties11 colored cottons (10 belongs to G. hirsutum and 1 belong to G. areboreum) 5 white-linted genotypes (4 belongs to G. hirsutum and 1 belong to G. areboreum)SL 7–9 crossed with FH-634 to raise F2 and F3 segregating population

45 RAPD primers03 RAPD primers45 RAPD primers400 RAPD primers

Khan et al. 2000;Mumtaz et al. 2010Khan et al. 2010Ali et al. 2009

RAPDs

USA

10 varieties of Upland cotton

86 RAPD primers

Lu and Myers 2002

Pakistan

30 cultivars of G. arboretum

50 RAPD primers

Mehboob-ur-Rahman et al. 2008

Iran

13 F1 and F2 cotton genotypes (Gossypium hirsutum) obtained by crossing

30 RAPD primers

Noormohammadi et al. 2011

India

Intraspecific cotton F1 hybrid and its parents

20 RAPD primers

Dongre et al. 2012

Iran

11 genotypes of G. hirsutum including 6 F2 progenies

40 RAPD primers

Noormohammadi et al. 2013a

USA

24 cultivars of G. hirsutum

88 SSR primers

Zhang et al. 2008

China

39 accessions of G. arboreum

358 SSR primers

Liu et al. 2006

China

108 accessions of Asiatic cotton and 1 G. herbaceum

60 SSR primers

Guo et al. 2007

China

43 sources of Upland cotton germplasm

36 SSR primers

Chen and Du 2006

France

47 genotypes of tetraploid cotton

320 SSR primers

Lacape et al. 2007

USA

96 accessions of G. arboreum

115 Genomic and EST-SSRs

Kantartzi et al. 2009

SSRs

Pakistan

8 accessions of G. hirsutumSL 7–9 crossed with FH-634 to raise F2 and F3 segregating population

32 SSR primers54 SSR primers

Qayyum et al. 2009;Ali et al. 2009

China

59 genotypes of G. hirsutum

40 EST-SSR primers

Zhang et al. 2011

Greece

29 genotypes of G. hirsutum and an interspecific hybrid

12 SSR primer pairs

Kalivas et al. 2011

China

56 accessions of Sea island cotton

237 SSR primers

Wang et al. 2011

Egypt

28 genotypes of Egyptian cotton

6 SSR and 5 EST-SSR primer

Abdellatif et al. 2012

Pakistan

19 genotypes of Bt cotton

104 SSR primers

Ullah et al. 2012

USA

193 cultivars of Upland cotton

448 SSR primers

Fang et al. 2010

USA

378 accessions of G. hirsutum and 3 of G. barbadense

120 SSR primers

Tyagi et al., 2014

Iran

11 genotypes of G. hirsutum including 6 F2 progenies

4 SSR primers

Noormohammadi et al. 2013a

USA

11 accessions of G. hirsutum and 2 from each of G. arboreum, G. herbaceum and G. barbadense

4 EcoRI-MseI primers for AFLP

Pillay and Myers, 1999

Belgium

Upland cotton, wild species (G. raimondii and G. thurbrii) and their BC3 progenies

5 AFLP primers

Mergeai et al. 1998

AFLPs

USA

3 diploid species of Gossypium, 3 G. barbadense cultivars and 43 G. hirsutum accessions

20 AFLP primers

Iqbal et al. 2001

USA

29 accessions from five species of the genus Gossypium

16 AFLP primers

Abdalla et al. 2001

India

24 lines of G. hirsutum L.

6 AFLP primers

Rana et al. 2005

Norway

131 accessions of G. barbadense

8 AFLP primers

Westengen et al. 2005

Iran

13 F1 and F2 cotton genotypes (Gossypium hirsutum)

8 ISSR primers

Noormohammadi et al. 2011

ISSRs

Egypt

28 Egyptian cotton genotypes

5 ISSR primers

Abdellatif et al. 2012

India

Intraspecific cotton F1 hybrid and its parents

19 ISSR primers

Dongre et al. 2012

Iran

11 genotypes of G. hirsutum including 6 F2 progenies

20 ISSR primers

Noormohammadi et al. 2013a

SNPs

Pakistan

2 cultivars of tetraploid cotton

Primers correspond to FIF1 gene

Ahmad et al. 2007

USA

24 lines of cotton

270 SNP loci and 92 Indel

Van Deynze et al. 2009