Marker | Country | Population type | Size | References |
---|---|---|---|---|
 | USA | 16 near-homozygous elite cotton genotypes | 80 RAPD primers | Tatineni et al. 1996 |
Pakistan | 31 Gossypium species, 3 subspecies and 1 interspecific hybrid18 cotton varieties11 colored cottons (10 belongs to G. hirsutum and 1 belong to G. areboreum) 5 white-linted genotypes (4 belongs to G. hirsutum and 1 belong to G. areboreum)SL 7–9 crossed with FH-634 to raise F2 and F3 segregating population | 45 RAPD primers03 RAPD primers45 RAPD primers400 RAPD primers | Khan et al. 2000;Mumtaz et al. 2010Khan et al. 2010Ali et al. 2009 | |
RAPDs | USA | 10 varieties of Upland cotton | 86 RAPD primers | Lu and Myers 2002 |
Pakistan | 30 cultivars of G. arboretum | 50 RAPD primers | Mehboob-ur-Rahman et al. 2008 | |
Iran | 13 F1 and F2 cotton genotypes (Gossypium hirsutum) obtained by crossing | 30 RAPD primers | Noormohammadi et al. 2011 | |
India | Intraspecific cotton F1 hybrid and its parents | 20 RAPD primers | Dongre et al. 2012 | |
Iran | 11 genotypes of G. hirsutum including 6 F2 progenies | 40 RAPD primers | Noormohammadi et al. 2013a | |
USA | 24 cultivars of G. hirsutum | 88 SSR primers | Zhang et al. 2008 | |
China | 39 accessions of G. arboreum | 358 SSR primers | Liu et al. 2006 | |
China | 108 accessions of Asiatic cotton and 1 G. herbaceum | 60 SSR primers | Guo et al. 2007 | |
China | 43 sources of Upland cotton germplasm | 36 SSR primers | Chen and Du 2006 | |
France | 47 genotypes of tetraploid cotton | 320 SSR primers | Lacape et al. 2007 | |
USA | 96 accessions of G. arboreum | 115 Genomic and EST-SSRs | Kantartzi et al. 2009 | |
SSRs | Pakistan | 8 accessions of G. hirsutumSL 7–9 crossed with FH-634 to raise F2 and F3 segregating population | 32 SSR primers54 SSR primers | |
China | 59 genotypes of G. hirsutum | 40 EST-SSR primers | Zhang et al. 2011 | |
Greece | 29 genotypes of G. hirsutum and an interspecific hybrid | 12 SSR primer pairs | Kalivas et al. 2011 | |
China | 56 accessions of Sea island cotton | 237 SSR primers | Wang et al. 2011 | |
Egypt | 28 genotypes of Egyptian cotton | 6 SSR and 5 EST-SSR primer | Abdellatif et al. 2012 | |
Pakistan | 19 genotypes of Bt cotton | 104 SSR primers | Ullah et al. 2012 | |
USA | 193 cultivars of Upland cotton | 448 SSR primers | Fang et al. 2010 | |
USA | 378 accessions of G. hirsutum and 3 of G. barbadense | 120 SSR primers | Tyagi et al., 2014 | |
Iran | 11 genotypes of G. hirsutum including 6 F2 progenies | 4 SSR primers | Noormohammadi et al. 2013a | |
USA | 11 accessions of G. hirsutum and 2 from each of G. arboreum, G. herbaceum and G. barbadense | 4 EcoRI-MseI primers for AFLP | Pillay and Myers, 1999 | |
Belgium | Upland cotton, wild species (G. raimondii and G. thurbrii) and their BC3 progenies | 5 AFLP primers | Mergeai et al. 1998 | |
AFLPs | USA | 3 diploid species of Gossypium, 3 G. barbadense cultivars and 43 G. hirsutum accessions | 20 AFLP primers | Iqbal et al. 2001 |
USA | 29 accessions from five species of the genus Gossypium | 16 AFLP primers | Abdalla et al. 2001 | |
India | 24 lines of G. hirsutum L. | 6 AFLP primers | Rana et al. 2005 | |
Norway | 131 accessions of G. barbadense | 8 AFLP primers | Westengen et al. 2005 | |
Iran | 13 F1 and F2 cotton genotypes (Gossypium hirsutum) | 8 ISSR primers | Noormohammadi et al. 2011 | |
ISSRs | Egypt | 28 Egyptian cotton genotypes | 5 ISSR primers | Abdellatif et al. 2012 |
India | Intraspecific cotton F1 hybrid and its parents | 19 ISSR primers | Dongre et al. 2012 | |
Iran | 11 genotypes of G. hirsutum including 6 F2 progenies | 20 ISSR primers | Noormohammadi et al. 2013a | |
SNPs | Pakistan | 2 cultivars of tetraploid cotton | Primers correspond to FIF1 gene | Ahmad et al. 2007 |
USA | 24 lines of cotton | 270 SNP loci and 92 Indel | Van Deynze et al. 2009 |