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Table 3 Physiochemical properties and sub cellular localization prediction of the mined genes within the major clusters of the consistent QTLs

From: Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

Gene ID

Protein Length / aa

Molecular Weight / kDa

Charge

Isoelectric Point

Grand Average of Hydropathy

Exon Number

Mean Exon Length / bp

Mean Intron Length / bp

Sub cellular localization

TargetP

pprowler

Wolfpsort

Gh_A01G1774

357

39.979

0

6.504

−0.128

5

214.8

430.5

S

SP

nucl

Gh_A01G1935

988

109.088

14

7.934

0.013

4

741.8

160.3

_

OTHER

nucl

Gh_A01G1936

352

39.524

−1.5

5.598

−0.034

3

353

95.5

_

OTHER

chlo

Gh_A01G1937

451

50.487

2.5

7.065

− 0.067

3

452

93

_

OTHER

nucl

Gh_A01G1938

427

47.747

−1

6.265

− 0.044

3

428

1 930.50

_

OTHER

chlo

Gh_A01G1939

779

86.296

12.5

8.292

−0.196

9

260

151.8

S

SP

nucl

Gh_A01G1940

306

33.661

15.5

10.036

0.895

4

230.3

817

S

SP

chlo

Gh_A01G1941

280

30.916

−20

4.234

−0.358

2

421.5

2 224.00

_

OTHER

nucl

Gh_A01G1942

227

25.397

10.5

9.383

−0.346

8

85.5

469.7

C

cTP

cyto

Gh_A01G1943

754

88.329

7

6.956

− 0.743

19

119.2

432

_

OTHER

nucl

Gh_A01G1944

463

51.223

21.5

10.135

−0.833

1

1 392.00

No intron

C

OTHER

nucl

Gh_A01G1945

98

11.051

−7.5

4.26

−0.219

1

297

No intron

_

OTHER

cyto

Gh_A01G1946

695

78.499

10.5

7.85

−0.104

1

2088.00

No intron

_

mTP

chlo

Gh_A01G1947

256

29.155

−16.5

4.38

−0.622

2

385.5

347

C

cTP

chlo

Gh_A01G1948

558

61.373

10

7.821

0.067

5

335.4

546

S

SP

chlo

Gh_A05G2519

986

112.494

33.5

9.137

−0.295

1

2 961.00

No intron

C

cTP

chlo

Gh_A05G2520

854

93.522

14.5

8.815

−0.228

3

855

317.5

_

OTHER

cyto

Gh_A05G2521

255

27.771

1.5

7.435

−0.935

1

768

No intron

_

OTHER

nucl

Gh_A05G2522

232

25.714

−12

4.252

0.126

7

99.9

425

C

cTP

chlo

Gh_A05G2523

116

12.804

2.5

7.904

−0.213

2

175.5

158

_

OTHER

cyto

Gh_A05G3283

320

35.87

6

7.592

−1.076

3

321

246

_

OTHER

nucl

Gh_A05G3284

152

17.211

2

7.448

0.12

2

229.5

93

S

SP

extr

Gh_A05G3285

508

56.448

11

8.69

−0.318

7

218.1

237.8

_

SP

chlo

Gh_A05G3286

272

30.036

4.5

7.7

−0.785

4

204.8

562.7

_

OTHER

nucl

Gh_A05G3287

1 927

224.222

37

8.872

−0.107

42

137.7

529.6

C

mTP

plas

Gh_D01G0174

550

61.943

−10

5.405

−0.205

3

551

1 097.50

_

OTHER

cyto

Gh_D01G0175

700

80.06

4

6.882

−0.197

2

1 051.50

567

_

OTHER

cyto

Gh_D01G0176

401

45.366

−20

4.645

−0.789

7

172.3

14 444.20

_

OTHER

chlo

Gh_D01G0177

402

43.82

0.5

6.546

0.076

1

1 209.00

No intron

S

SP

chlo

Gh_D01G0178

718

81.905

22

9.613

−0.889

16

134.8

133.1

_

OTHER

nucl

Gh_D01G0179

115

12.729

−1.5

5.533

0.254

1

348

No intron

S

SP

extr

Gh_D01G0180

339

38.396

9.5

7.668

−0.782

1

1 020.00

No intron

_

OTHER

nucl

Gh_D01G0181

341

38.471

9

7.512

−0.769

1

1 026.00

No intron

_

OTHER

nucl

Gh_D01G0182

888

97.577

−24.5

4.905

−0.095

25

106.7

153.5

_

OTHER

plas

Gh_D01G0183

424

46.661

1

6.587

−0.69

6

212.5

170.6

_

OTHER

nucl

Gh_D01G0184

73

7.777

2

7.966

1.595

2

111

153

S

SP

extr

Gh_D01G0185

348

38.639

7.5

8.795

−0.395

3

349

469

_

OTHER

cysk

Gh_D01G0186

670

75.597

14

8.168

−0.235

13

154.8

309

M

mTP

nucl

Gh_D01G0187

672

75.797

19

8.641

−0.236

13

155.3

399.5

M

mTP

nucl

Gh_D01G0188

1 029

114.338

−2

6.384

−0.115

3

1 030.00

245

_

OTHER

nucl

Gh_D01G0189

558

62.6

14

7.929

−0.102

1

1 677.00

No intron

M

mTP

chlo

Gh_D01G0190

1 136

125.426

30.5

9.241

0.704

4

852.8

496.3

C

SP

plas

Gh_D01G0191

225

24.848

5.5

7.502

−0.988

4

169.5

417

_

OTHER

nucl

Gh_D01G0192

203

23.652

5.5

9.159

−0.758

4

153

725.7

_

OTHER

cyto

Gh_D01G0193

911

100.512

−9

5.919

−0.548

15

182.4

197.1

_

OTHER

nucl

Gh_D01G0194

363

39.691

−4.5

5.24

−0.699

3

364

732

_

OTHER

nucl

Gh_D01G0195

827

92.435

14

7.517

−0.473

19

130.7

259.8

_

OTHER

nucl

Gh_D01G0196

206

23.297

13

10.798

−0.618

5

124.2

100.8

_

OTHER

nucl

Gh_D01G0197

228

25.286

−6

5.286

−0.479

5

137.4

527.3

_

OTHER

chlo

Gh_D01G0198

181

19.829

−17.5

4.236

−0.926

2

273

235

C

OTHER

chlo

Gh_D01G0199

130

14.537

0

6.475

0.075

3

131

1 274.50

_

SP

extr

Gh_D01G0200

470

51.491

−4.5

5.821

−0.604

4

353.3

336.3

_

OTHER

nucl

Gh_D01G0201

362

39.258

−1.5

5.891

−0.043

14

77.8

227.1

M

mTP

mito

Gh_D01G0202

266

29.758

11

9.845

0.62

7

114.4

429.2

S

SP

chlo

Gh_D01G0203

463

50.97

3.5

6.989

−0.594

5

278.4

724

C

OTHER

nucl

Gh_D01G0204

463

51.217

5.5

7.863

−0.613

5

278.4

788.3

C

OTHER

nucl

Gh_D01G0205

481

53.146

−4.5

6.102

−0.05

10

144.6

377.6

_

OTHER

cyto

Gh_D01G0206

259

28.11

13

10.307

−0.397

7

111.4

302.8

C

cTP

chlo

Gh_D01G0207

450

50.452

2

6.841

−0.286

7

193.3

220.3

_

OTHER

cyto

Gh_D01G0208

598

67.75

5

7.185

−0.373

10

179.7

284.9

C

cTP

chlo

Gh_D01G0209

268

30.766

−13

4.653

−0.491

1

807

No intron

_

SP

E.R.

Gh_D01G0210

702

75.521

0

6.545

−0.06

4

527.3

196.3

C

cTP

chlo

Gh_D01G0211

751

84.485

3

6.889

−0.144

9

250.7

499.4

C

cTP

chlo

Gh_D01G0212

521

57.652

0.5

6.631

−0.122

9

174

404.9

S

SP

chlo

Gh_D01G0213

372

42.957

5.5

7.368

−0.469

6

186.5

1 091.20

M

mTP

nucl

Gh_D01G0214

691

76.102

3.5

6.837

−0.005

20

103.8

697.4

_

OTHER

extr

Gh_D01G0215

697

76.446

11.5

8.01

−0.082

23

91

278.4

_

OTHER

chlo

Gh_D01G0216

796

87.405

12

8.153

0.19

24

99.6

190.6

_

SP

plas

Gh_D01G0217

366

40.714

12.5

9.663

−0.562

11

100.1

316.3

_

OTHER

nucl

Gh_D01G0218

118

13.346

0.5

6.672

−0.161

3

119

768.5

_

OTHER

cyto

Gh_D01G0219

159

18.301

2.5

7.734

−0.451

1

480

No intron

_

OTHER

cyto

Gh_D01G0220

329

37.446

9

9.026

−0.553

8

123.8

344.4

_

OTHER

nucl

Gh_D01G0221

73

8.004

−1.5

5.584

0.064

2

111

133

_

OTHER

cyto

Gh_D01G0222

212

23.909

8

9.006

−0.018

4

159.8

425.7

S

SP

nucl

Gh_D01G0223

251

27.12

−1.5

6.022

−0.213

4

189

413.3

_

OTHER

chlo

Gh_D01G0224

445

50.884

13

9.42

−0.269

6

223

436

_

SP

chlo

Gh_D01G0225

386

42.709

−13

4.668

0.091

11

105.5

309.3

_

OTHER

cyto

Gh_D01G0226

1 076

119.125

−6

6.006

−0.647

13

248.5

321.1

_

OTHER

nucl

Gh_D01G0227

162

18.032

10

10.114

0.358

5

97.8

275

S

SP

plas

Gh_D01G0228

239

26.313

5

9.003

0.04

1

720

No intron

_

OTHER

chlo

Gh_D01G0229

239

26.218

6.5

9.285

−0.033

1

720

No intron

_

OTHER

mito

Gh_D01G0230

207

23.198

11.5

9.683

−0.968

1

624

No intron

_

OTHER

nucl

Gh_D01G0231

420

47.488

9.5

8.78

−0.308

8

157.9

368.3

C

cTP

chlo

Gh_D01G0232

420

47.471

11.5

8.886

−0.304

8

157.9

886.3

C

cTP

chlo

Gh_D01G0233

1 035

112.771

31.5

8.877

−0.45

9

345.3

284.6

_

OTHER

nucl

Gh_D01G0234

134

15.462

14

10.864

−0.41

5

81

296.3

_

OTHER

cyto

Gh_D01G0235

873

98.951

−0.5

6.475

−0.233

24

109.3

252.7

S

OTHER

nucl

Gh_D01G0236

1 039

116.109

11.5

7.216

−0.274

5

624

276.5

_

mTP

nucl

Gh_D01G0237

194

20.965

3.5

8.967

−1.206

4

146.3

518.3

_

OTHER

nucl

  1. aa Amino acid, kDa kiloDalton, bp Base pair, chlo Chloroplast, cyto Cytoplasm, extr Extracellular part of the cell, nucl Nucleus, mito Mitochondrion, cysk Cytoskeleton, golg Golgi body, vacu Vacuole, plas Plasma membrane, E.R Endoplasmic reticulum, SP Secretory pathway (presence of a signal peptide), mTP Mitochondrial targeting peptide, cTP Chloroplast transit peptide, Other (nucleus, cytoplasmic, or otherwise), C cytoplasm, S secretory pathway, M mitochondrion and -: others/other cell organelles