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Table 4 Physiochemical properties and sub cellular localization prediction of the mined genes within the major clusters of the consistent QTLs

From: Identification of QTLs and candidate genes for physiological traits associated with drought tolerance in cotton

Gene IDProtein Length / aaMolecular Weight / kDaChargepIGRAVYExon NumberMean Exon Length / bpMean Intron Length / bpSub cellular localization
TargetPpprowlerWolfpsort
Gh_A01G177435739.97906.504−0.1285214.8430.5SSPnucl
Gh_A01G1935988109.088147.9340.0134741.8160.3_Othernucl
Gh_A01G193635239.524−1.55.598−0.034335395.5_Otherchlo
Gh_A01G193745150.4872.57.065−0.067345293_Othernucl
Gh_A01G193842747.747−16.265−0.04434281 930.50_Otherchlo
Gh_A01G193977986.29612.58.292−0.1969260151.8SSPnucl
Gh_A01G194030633.66115.510.0360.8954230.3817SSPchlo
Gh_A01G194128030.916−204.234−0.3582421.52 224.00_Othernucl
Gh_A01G194222725.39710.59.383−0.346885.5469.7CcTPcyto
Gh_A01G194375488.32976.956−0.74319119.2432_Othernucl
Gh_A01G194446351.22321.510.135−0.83311 392.00No intronCOthernucl
Gh_A01G19459811.051−7.54.26−0.2191297No intron_Othercyto
Gh_A01G194669578.49910.57.85−0.10412088.00No intron_mTPchlo
Gh_A01G194725629.155−16.54.38−0.6222385.5347CcTPchlo
Gh_A01G194855861.373107.8210.0675335.4546SSPchlo
Gh_A05G2519986112.49433.59.137−0.29512 961.00No intronCcTPchlo
Gh_A05G252085493.52214.58.815−0.2283855317.5_Othercyto
Gh_A05G252125527.7711.57.435−0.9351768No intron_Othernucl
Gh_A05G252223225.714−124.2520.126799.9425CcTPchlo
Gh_A05G252311612.8042.57.904−0.2132175.5158_Othercyto
Gh_A05G328332035.8767.592−1.0763321246_Othernucl
Gh_A05G328415217.21127.4480.122229.593SSPextr
Gh_A05G328550856.448118.69−0.3187218.1237.8_SPchlo
Gh_A05G328627230.0364.57.7−0.7854204.8562.7_Othernucl
Gh_A05G32871927224.222378.872−0.10742137.7529.6CmTPplas
Gh_D01G017455061.943−105.405−0.20535511 097.50_Othercyto
Gh_D01G017570080.0646.882−0.19721 051.50567_Othercyto
Gh_D01G017640145.366−204.645−0.7897172.314 444.20_Otherchlo
Gh_D01G017740243.820.56.5460.07611 209.00No intronSSPchlo
Gh_D01G017871881.905229.613−0.88916134.8133.1_Othernucl
Gh_D01G017911512.729−1.55.5330.2541348No intronSSPextr
Gh_D01G018033938.3969.57.668−0.78211 020.00No intron_Othernucl
Gh_D01G018134138.47197.512−0.76911 026.00No intron_Othernucl
Gh_D01G018288897.577−24.54.905−0.09525106.7153.5_Otherplas
Gh_D01G018342446.66116.587−0.696212.5170.6_Othernucl
Gh_D01G0184737.77727.9661.5952111153SSPextr
Gh_D01G018534838.6397.58.795−0.3953349469_Othercysk
Gh_D01G018667075.597148.168−0.23513154.8309MmTPnucl
Gh_D01G018767275.797198.641−0.23613155.3399.5MmTPnucl
Gh_D01G01881 029114.338−26.384−0.11531 030.00245_Othernucl
Gh_D01G018955862.6147.929−0.10211 677.00No intronMmTPchlo
Gh_D01G01901 136125.42630.59.2410.7044852.8496.3CSPplas
Gh_D01G019122524.8485.57.502−0.9884169.5417_Othernucl
Gh_D01G019220323.6525.59.159−0.7584153725.7_Othercyto
Gh_D01G0193911100.512−95.919−0.54815182.4197.1_Othernucl
Gh_D01G019436339.691−4.55.24−0.6993364732_Othernucl
Gh_D01G019582792.435147.517−0.47319130.7259.8_Othernucl
Gh_D01G019620623.2971310.798−0.6185124.2100.8_Othernucl
Gh_D01G019722825.286−65.286−0.4795137.4527.3_Otherchlo
Gh_D01G019818119.829−17.54.236−0.9262273235COtherchlo
Gh_D01G019913014.53706.4750.07531311 274.50_SPextr
Gh_D01G020047051.491−4.55.821−0.6044353.3336.3_Othernucl
Gh_D01G020136239.258−1.55.891−0.0431477.8227.1MmTPmito
Gh_D01G020226629.758119.8450.627114.4429.2SSPchlo
Gh_D01G020346350.973.56.989−0.5945278.4724COthernucl
Gh_D01G020446351.2175.57.863−0.6135278.4788.3COthernucl
Gh_D01G020548153.146−4.56.102−0.0510144.6377.6_Othercyto
Gh_D01G020625928.111310.307−0.3977111.4302.8CcTPchlo
Gh_D01G020745050.45226.841−0.2867193.3220.3_Othercyto
Gh_D01G020859867.7557.185−0.37310179.7284.9CcTPchlo
Gh_D01G020926830.766−134.653−0.4911807No intron_SPE.R.
Gh_D01G021070275.52106.545−0.064527.3196.3CcTPchlo
Gh_D01G021175184.48536.889−0.1449250.7499.4CcTPchlo
Gh_D01G021252157.6520.56.631−0.1229174404.9SSPchlo
Gh_D01G021337242.9575.57.368−0.4696186.51 091.20MmTPnucl
Gh_D01G021469176.1023.56.837−0.00520103.8697.4_Otherextr
Gh_D01G021569776.44611.58.01−0.0822391278.4_Otherchlo
Gh_D01G021679687.405128.1530.192499.6190.6_SPplas
Gh_D01G021736640.71412.59.663−0.56211100.1316.3_Othernucl
Gh_D01G021811813.3460.56.672−0.1613119768.5_Othercyto
Gh_D01G021915918.3012.57.734−0.4511480No intron_Othercyto
Gh_D01G022032937.44699.026−0.5538123.8344.4_Othernucl
Gh_D01G0221738.004−1.55.5840.0642111133_Othercyto
Gh_D01G022221223.90989.006−0.0184159.8425.7SSPnucl
Gh_D01G022325127.12−1.56.022−0.2134189413.3_Otherchlo
Gh_D01G022444550.884139.42−0.2696223436_SPchlo
Gh_D01G022538642.709−134.6680.09111105.5309.3_Othercyto
Gh_D01G02261 076119.125−66.006−0.64713248.5321.1_Othernucl
Gh_D01G022716218.0321010.1140.358597.8275SSPplas
Gh_D01G022823926.31359.0030.041720No intron_Otherchlo
Gh_D01G022923926.2186.59.285−0.0331720No intron_Othermito
Gh_D01G023020723.19811.59.683−0.9681624No intron_Othernucl
Gh_D01G023142047.4889.58.78−0.3088157.9368.3CcTPchlo
Gh_D01G023242047.47111.58.886−0.3048157.9886.3CcTPchlo
Gh_D01G02331 035112.77131.58.877−0.459345.3284.6_Othernucl
Gh_D01G023413415.4621410.864−0.41581296.3_Othercyto
Gh_D01G023587398.951−0.56.475−0.23324109.3252.7SOthernucl
Gh_D01G02361 039116.10911.57.216−0.2745624276.5_mTPnucl
Gh_D01G023719420.9653.58.967−1.2064146.3518.3_Othernucl
  1. aa Amino acid, kDa KiloDalton, bp Base pair, chlo Chloroplast, cyto Cytoplasm, extr Extracellular part of the cell, nucl Nucleus, mito Mitochondrion, cysk Cytoskeleton, golg Golgi body, vacu Vacuole, plas Plasma membrane, E.R Endoplasmic reticulum, SP Secretory pathway (presence of a signal peptide), mTP Mitochondrial targeting peptide, cTP Chloroplast transit peptide, Other (nucleus, cytoplasmic, or otherwise), C Cytoplasm, S Secretory pathway, M Mitochondrion and -: others/other cell organelles