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Table 2 Summary of SNPs significantly associated with fiber micronaire in five environments

From: Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.)

QTL

Marker

Chr.

Position /bp

-log10(P)

R2/%

Environment

Reported previously

qFM-A10–1

i12339Gh

A10

100 279 301

4.85

20.89

16_Ay

Jamshed et al. 2016

 

i12239Gh

A10

100 587 583

6.84

29.39

15_Ay

 

qFM-A12–1

i61168Gt

A12

67 381 479

4.91

20.9

16_Ay

 

i08143Gh

A12

68 066 658

4.41

18.97

16_Ale

 

i27811Gh

A12

68 205 857

4.22∼4.78

21.35∼24.04

16_Ay 16_Sy

 

i41990Gh

A12

68 321 416

4.22∼4.78

21.35∼24.04

16_Ay 16_Sy

 

i47170Gh

A12

68 410 009

4.22∼4.78

21.35∼24.04

16_Ay 16_Sy

 

i38887Gh

A12

68 472 462

4.49∼5.59

19.32∼24.00

16_Ay 16_Sy BLUP

 

i21853Gh

A12

68 540 285

4.22∼4.78

21.35∼24.04

16_Ay 16_Sy

 

i43838Gh

A12

68 551 427

4.22∼4.78

21.35∼24.04

16_Ay 16_Sy

 

i08151Gh

A12

68 597 376

4.34∼4.73

20.34∼28.45

16_Ay 16_Sy

 

i32282Gh

A12

68 673 029

4.48∼5.27

19.91∼23.44

16_Ay 16_Sy BLUP

 

i27971Gh

A12

68 695 670

4.53

22.95

16_Sy

 

i41399Gh

A12

68 715 788

4.53

22.95

16_Sy

 

qFM-A13–1

i20979Gh

A13

2 132 189

4.23

28.53

14_Ay

Wang et al. 2017a, b; Jamshed et al. 2016

i13041Gh

A13

2 704 662

4.29

28.23

16_Ay

 

qFM-A13–2

i35441Gh

A13

74 952 854

6.64

31.45

15_Ay

 

i32750Gh

A13

75 105 822

4.39∼4.60

22.35∼23.00

15_Ay 16_Sy

 

i46646Gh

A13

75 109 913

5.14∼5.39

22.12∼22.95

15_Ay 16_Sy BLUP

 

i41773Gh

A13

75 116 067

5.14∼5.39

22.12∼22.95

15_Ay 16_Sy BLUP

 

i33120Gh

A13

75 129 388

4.32∼4.63

22.25∼23.65

15_Ay 16_Sy BLUP

 

i30758Gh

A13

75 130 352

4.21

18.1

16_Ale

 

i35636Gh

A13

75 242 672

5.14∼5.39

22.12∼22.95

15_Ay 16_Sy

 

i01190Gh

A13

75 398 430

4.26

18.29

16_Ale

 

i42228Gh

A13

75 472 091

4.35

19.55

16_Ale

 

i13652Gh

A13

75 504 093

4.44

19.09

16_Ale

 

qFM-D03–1

i03515Gh

D03

42 362 797

4.63

23.13

16_Ay

Diouf et al. 2018

i21465Gh

D03

43 276 036

4.91

20.9

16_Ay

 

i61219Gt

D03

44 406 129

4.39

22.35

15_Ay

 

i63893Gm

D03

44 581 155

4.46∼6.29

19.27∼26.62

15_Ay BLUP

 

i43459Gh

D03

45 627 279

4.31

18.31

15_Ay

 

i14956Gh

D03

45 689 086

4.31

18.31

15_Ay

 

qFM-D06–1

i10547Gh

D06

547 763

4.44∼4.81

20.47∼25.26

14_Ay 15_Ay

Chen et al. 2018

i19728Gh

D06

689 943

4.76

23.7

15_Ay

 

qFM-D08–1

i15175Gh

D08

58 849 763

4.56

30.39

14_Ay

Wang et al. 2017a, b; Jia et al. 2018

i15177Gh

D08

58 905 788

4.56

30.39

14_Ay

 

i04608Gh

D08

61 265 566

4.86

20.71

15_Ay

 

i04610Gh

D08

61 327 863

5.14

25.34

15_Ay

 

i44633Gh

D08

61 354 352

5.14

25.34

15_Ay

 

i47262Gh

D08

61 379 191

4.98

21.45

15_Ay

 

qFM-D09–1

i38863Gh

D09

29 968 447

4.91

20.9

16_Ay

Jia et al. 2018

i32012Gh

D09

30 108 133

4.91

20.9

16_Ay

 

i45347Gh

D09

30 133 934

4.91

20.9

16_Ay

 

i27999Gh

D09

30 418 262

4.75

23.66

16_Ay

 

i19190Gh

D09

30 866 022

4.43

18.84

15_Ay

 

i06010Gh

D09

30 870 947

4.43

18.84

15_Ay

 

i06011Gh

D09

30 873 661

4.43

18.84

15_Ay

 

qFM-D10–1

i11504Gh

D10

877 970

4.58∼5.85

21.02∼26.08

14Ay 16Sy BLUP

 

i11512Gh

D10

944 253

4.89

21.04

16_Sy

 

i19999Gh

D10

946 181

4.28

21.83

16_Sy

 

i11564Gh

D10

1 938 451

4.30∼4.36

18.48∼18.72

16_Sy 16Ale

 

qFM-D11–1

i00901Gh

D11

5 706 308

6.36

31.64

15_Ay

Zhang et al. 2016; Jia et al. 2018

i50152Gb

D11

5 792 360

4.51

22.88

16_Sy

 

qFM-D12–1

i08142Gh

D12

43 263 390

4.51

26.42

14_Ay

Huang et al. 2017

i08144Gh

D12

43 267 732

4.41

28.97

16_Ale