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Table 3 Candidate genes for micronaire

From: Genome-wide association study of micronaire using a natural population of representative upland cotton (Gossypium hirsutum L.)

Gene

Physical position

Homologs in A. thaliana

Functional annotation

Gh_A10G2157

A10:100434822–100 435 289

AT3G11110

RING/U-box superfamily protein

Gh_A10G2169

A10:100571847–100 572 047

–

–

Gh_A10G2174

A10:100618393–100 647 910

AT4G27190

NB-ARC domain-containing disease resistance protein

Gh_A10G2176

A10:100676093–100 688 392

–

–

Gh_A12G1287

A12:68269264–68 269 998

AT1G03870

fasciclin-like arabinoogalactan 9 (FLA9)

Gh_A13G0120

A13:1383789–1 385 806

AT1G52340

NAD(P)-binding Rossmann-fold superfamily protein

Gh_A13G0121

A13:1394586–1 395 093

AT2G41430

dehydration-induced protein (ERD15)

Gh_A13G0133

A13:1519272–1 521 026

AT5G17540

HXXXD-type acyltransferase family protein

Gh_A13G0188

A13:2123316–2 124 229

AT2G37590

DNA binding with one finger 2.4 (DOF2.4)

Gh_A13G0220

A13:2631476–2 632 431

AT3G01390

vacuolar membrane ATPase 10 (VMA10)

Gh_A13G1555

A13:74370130–74 370 630

AT1G09310

protein of unknown function, DUF538

Gh_A13G1563

A13:74415625–74 417 872

AT1G09380

nodulin MtN21/EamA-like transporter family protein

Gh_A13G1570

A13:74527856–74 528 134

–

–

Gh_A13G1573

A13:74594101–74 600 768

AT2G24520

H(+)-ATPase 5 (HA5)

Gh_A13G1640

A13:75324608–75 326 119

AT5G25820

exostosin family protein

Gh_D03G1332

D03:41738284–41 744 222

AT5G22920

CHY-type/CTCHY-type/RING-type zinc finger protein

Gh_D03G1452

D03:43497008–43 499 238

AT5G12250

beta-6 tubulin (TUB6)

Gh_D03G1533

D03:44563981–44 565 739

AT1G62790

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Gh_D06G0032

D06:322107–322 808

AT1G75390

basic leucine-zipper 44 (bZIP44)

Gh_D06G0041

D06:479879–483 912

AT5G42800

dihydroflavonol 4-reductase

Gh_D09G0646

D09:29655772–29 660 487

AT3G17180

serine carboxypeptidase-like 33 (scpl33)

Gh_D10G0078

D10:622188–623 235

AT4G16380

Heavy metal transport/detoxification superfamily protein

Gh_D11G0597

D11:5211532–5 212 612

AT3G51520

diacylglycerol acyltransferase family

Gh_D11G0639

D11:5582090–5 583 296

AT5G13870

xyloglucan endotransglucosylase/hydrolase 5

Gh_D11G0718

D11:6198554–6 200 040

AT3G28150

trichome birefringence-like 22 (TBL22)

Gh_D11G0750

D11:6489218–6 489 475

AT5G54100

SPFH/Band 7/PHB domain-containing membrane-associated protein family

Gh_D12G1409

D12:43357297–43 358 031

AT1G03870

fasciclin-like arabinoogalactan 9 (FLA9)