Evolution of pectin synthesis relevant galacturonosyltransferase gene family and its expression during cotton fiber development

FAN, Senmiao; LIU, Aiying; ZOU, Xianyan; ZHANG, Zhen; GE, Qun; GONG, Wankui; LI, Junwen; GONG, Juwu; SHI, Yuzhen; DENG, Xiaoying; JIA, Tingting; YUAN, Youlu; SHANG, Haihong

doi:10.1186/s42397-021-00099-z

Table 1 Chromosomal locus ID and length of the encoded galacturonosyltransferase proteins in cotton

From: Evolution of pectin synthesis relevant galacturonosyltransferase gene family and its expression during cotton fiber development

cotton species	Gene model	ID	Chromosomes	Start	End	CDS length /bp	Protein length /aa	Arabidopsis ortholog	Arabidopsis protein description	classification
G. arboreum	GaGAUT01	Ga01G0140	Chr01	912 602	919 551	1 974	657	AT2G46480.1	GAUT2	GAUT-A
	GaGAUT02	Ga01G0796	Chr01	11 759 252	11 761 952	1 605	534	AT3G01040.1	GAUT13	GAUT-C
	GaGAUT03	Ga03G0997	Chr03	28 017 614	28 023 124	1 827	608	AT2G38650.1	GAUT7	GAUT-A
	GaGAUT04	Ga04G0446	Chr04	6 075 632	6 079 138	1 602	533	AT1G18580.1	GAUT11	GAUT-B
	GaGAUT05	Ga04G1634	Chr04	90 270 116	90 274 871	1 602	533	AT3G01040.1	GAUT13	GAUT-C
	GaGAUT06	Ga04G1718	Chr04	92 087 105	92 095 131	1 719	572	AT3G58790.1	GAUT15	GAUT-C
	GaGAUT07	Ga05G1886	Chr05	17 017 554	17 030 587	2 328	775	AT2G38650.1	GAUT7	GAUT-A
	GaGAUT08	Ga06G1924	Chr06	120 827 230	120 831 246	1 863	620	AT2G38650.1	GAUT7	GAUT-A
	GaGAUT09	Ga07G2432	Chr07	93 674 605	93 678 413	1 800	599	AT1G06780.1	GAUT6	GAUT-A
	GaGAUT10	Ga07G1617	Chr07	33 502 551	33 506 162	2 046	681	AT1G18580.1	GAUT11	GAUT-B
	GaGAUT11	Ga07G2025	Chr07	79 624 753	79 627 031	1 674	557	AT3G02350.1	GAUT9	GAUT-B
	GaGAUT12	Ga07G1793	Chr07	47 136 518	47 138 700	1 695	564	AT3G02350.1	GAUT9	GAUT-B
	GaGAUT13	Ga07G1005	Chr07	13 869 804	13 874 208	1 695	564	AT3G02350.1	GAUT9	GAUT-B
	GaGAUT14	Ga08G2216	Chr08	120 833 143	120 836 579	1 758	585	AT1G06780.1	GAUT6	GAUT-A
	GaGAUT15	Ga08G0724	Chr08	11 007 501	11 030 719	1 803	600	AT1G06780.1	GAUT6	GAUT-A
	GaGAUT16	Ga08G1537	Chr08	103 324 886	103 331 544	2 376	791	AT2G46480.1	GAUT2	GAUT-A
	GaGAUT17	Ga09G2452	Chr09	81 931 389	81 936 357	1 830	609	AT2G38650.1	GAUT7	GAUT-A
	GaGAUT18	Ga09G0159	Chr09	3 533 841	3 539 737	1 476	491	AT3G01040.1	GAUT13	GAUT-C
	GaGAUT19	Ga11G2709	Chr11	109 497 004	109 501 318	1 797	598	AT1G06780.1	GAUT6	GAUT-A
	GaGAUT20	Ga11G3730	Chr11	121 180 096	121 183 320	1 602	533	AT1G18580.1	GAUT11	GAUT-B
	GaGAUT21	Ga11G3192	Chr11	116 488 843	116 492 318	2 031	676	AT1G18580.1	GAUT11	GAUT-B
	GaGAUT22	Ga11G3319	Chr11	117 670 007	117 673 612	1 602	533	AT3G01040.1	GAUT13	GAUT-C
	GaGAUT23	Ga12G2518	Chr12	93 835 048	93 837 447	1 683	560	AT3G02350.1	GAUT9	GAUT-B
	GaGAUT24	Ga13G0584	Chr13	8 732 738	8 736 526	2 046	681	AT3G61130.1	GAUT1	GAUT-A
	GaGAUT25	Ga13G1828	Chr13	108 148 486	108 151 333	1 623	540	AT5G54690.1	GAUT12	GAUT-C
G. barbadense	GbGAUT01	GOBAR_AA01456	At_S0001	1 016 334	1 024 307	1 989	662	AT4G38270.1	GAUT3	GAUT-A
	GbGAUT02	GOBAR_AA00301	At_S0001	9 613 451	9 616 141	1 605	534	AT5G54690.1	GAUT12	GAUT-C
	GbGAUT03	GOBAR_AA01219	At_S0002	23 157 092	23 162 812	1 812	603	AT2G38650.1	GAUT7	GAUT-A
	GbGAUT04	GOBAR_AA02321	At_S0004	74 825 334	74 826 761	1 428	475	AT1G18580.1	GAUT11	GAUT-B
	GbGAUT05	GOBAR_AA25346	At_S0005	14 497 863	14 501 682	1 887	628	AT2G38650.1	GAUT7	GAUT-A
	GbGAUT06	GOBAR_AA13922	At_S0005	93 596 407	93 601 574	1 752	583	AT3G01040.1	GAUT13	GAUT-C
	GbGAUT07	GOBAR_AA10943	At_S0006	107 027 362	107 031 375	1 731	576	AT2G38650.1	GAUT7	GAUT-A
	GbGAUT08	GOBAR_AA06647	At_S0007	89 670 406	89 674 210	1 800	599	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT09	GOBAR_AA01514	At_S0007	75 555 669	75 557 947	1 674	557	AT3G02350.1	GAUT9	GAUT-B
	GbGAUT10	GOBAR_AA37671	At_S0007	15 099 056	15 101 716	1 710	569	AT3G25140.1	GAUT8	GAUT-B
	GbGAUT11	GOBAR_AA14268	At_S0007	46 927 015	46 929 189	1 590	529	AT3G25140.1	GAUT8	GAUT-B
	GbGAUT12	GOBAR_AA04077	At_S0008	11 065 254	11 067 714	1 134	377	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT13	GOBAR_AA34869	At_S0009	73 319 234	73 324 201	1 830	609	AT2G38650.1	GAUT7	GAUT-A
	GbGAUT14	GOBAR_AA07870	At_S0009	2 874 750	2 880 650	1 539	512	AT3G01040.1	GAUT13	GAUT-C
	GbGAUT15	GOBAR_AA36945	At_S0011	13 994 303	13 999 030	1 656	551	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT16	GOBAR_AA25184	At_S0011	7 886 584	7 890 058	1 950	649	AT2G46480.1	GAUT2	GAUT-A
	GbGAUT17	GOBAR_AA35174	At_S0011	6 702 894	6 713 442	4 899	1 632	AT3G01040.1	GAUT13	GAUT-C
	GbGAUT18	GOBAR_AA22791	At_S0012	13 348 599	13 350 991	1 683	560	AT3G02350.1	GAUT9	GAUT-B
	GbGAUT19	GOBAR_AA03897	At_S0013	14 455 836	14 460 722	2 064	687	AT4G38270.1	GAUT3	GAUT-A
	GbGAUT20	GOBAR_AA05453	At_S0013	77 398 681	77 401 498	1 539	512	AT5G54690.1	GAUT12	GAUT-C
	GbGAUT21	GOBAR_AA14759	At_S0386	114 937	118 369	1 497	498	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT22	GOBAR_DD05031	Dt_S0001	933 831	940 348	2 067	688	AT4G38270.1	GAUT3	GAUT-A
	GbGAUT23	GOBAR_DD13138	Dt_S0001	9 304 556	9 307 362	1 347	448	AT5G54690.1	GAUT12	GAUT-C
	GbGAUT24	GOBAR_DD33622	Dt_S0004	44 183 238	44 186 775	1 602	533	AT1G18580.1	GAUT11	GAUT-B
	GbGAUT25	GOBAR_DD37379	Dt_S0004	6 278 421	6 283 494	1 851	616	AT3G01040.1	GAUT13	GAUT-C
	GbGAUT26	GOBAR_DD20347	Dt_S0004	6 480 662	6 485 936	1 758	585	AT3G01040.1	GAUT13	GAUT-C
	GbGAUT27	GOBAR_DD28302	Dt_S0005	16 373 039	16 381 357	2 811	936	AT5G47780.1	GAUT4	GAUT-A
	GbGAUT28	GOBAR_DD32865	Dt_S0006	52 531 030	52 535 058	1 608	535	AT5G47780.1	GAUT4	GAUT-A
	GbGAUT29	GOBAR_DD34963	Dt_S0007	51 871 252	51 875 198	1 800	599	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT30	GOBAR_DD05509	Dt_S0007	26 427 319	26 430 903	2 088	695	AT1G18580.1	GAUT11	GAUT-B
	GbGAUT31	GOBAR_DD33929	Dt_S0007	43 934 795	43 936 661	1 476	491	AT3G02350.1	GAUT9	GAUT-B
	GbGAUT32	GOBAR_DD27569	Dt_S0007	31 847 170	31 849 350	1 695	564	AT3G25140.1	GAUT8	GAUT-B
	GbGAUT33	GOBAR_DD14647	Dt_S0007	13 131 930	13 134 606	1 710	569	AT3G25140.1	GAUT8	GAUT-B
	GbGAUT34	GOBAR_DD04306	Dt_S0008	44 255 956	44 259 633	2 019	672	AT2G46480.1	GAUT2	GAUT-A
	GbGAUT35	GOBAR_DD07609	Dt_S0008	8 776 221	8 778 456	1 134	377	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT36	GOBAR_DD34943	Dt_S0008	56 586 461	56 590 364	1 743	580	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT37	GOBAR_DD05442	Dt_S0011	11 746 553	11 750 934	1 761	586	AT1G06780.1	GAUT6	GAUT-A
	GbGAUT38	GOBAR_DD22761	Dt_S0011	2 807 344	2 808 777	1 434	477	AT1G18580.1	GAUT11	GAUT-B
	GbGAUT39	GOBAR_DD24858	Dt_S0011	7 360 685	7 363 733	1 485	494	AT2G46480.1	GAUT2	GAUT-A
	GbGAUT40	GOBAR_DD38263	Dt_S0011	6 083 354	6 086 957	1 536	511	AT3G01040.1	GAUT13	GAUT-C
	GbGAUT41	GOBAR_DD34814	Dt_S0012	8 771 758	8 774 141	1 683	560	AT3G02350.1	GAUT9	GAUT-B
	GbGAUT42	GOBAR_DD11145	Dt_S0013	46 541 744	46 544 946	1 272	423	AT5G54690.1	GAUT12	GAUT-C
G. hirsutum	GhGAUT01	Gh_A01G0568	A01	9 996 974	9 999 674	1 605	534	AT5G54690.1	GAUT12	GAUT-C
	GhGAUT02	Gh_A02G0896	A02	32 207 939	32 213 457	1 824	607	AT2G38650.1	GAUT7	GAUT-A
	GhGAUT03	Gh_A04G0911	A04	57 533 849	57 537 350	1 602	533	AT2G20810.1	GAUT10	GAUT-B
	GhGAUT04	Gh_A05G3203	A05	83 801 743	83 806 499	1 602	533	AT3G01040.1	GAUT13	GAUT-C
	GhGAUT05	Gh_A05G3268	A05	85 630 826	85 638 852	1 719	572	AT3G58790.1	GAUT15	GAUT-C
	GhGAUT06	Gh_A05G1520	A05	15 501 936	15 516 418	2 805	934	AT5G47780.1	GAUT4	GAUT-A
	GhGAUT07	Gh_A06G1385	A06	95 717 993	95 722 006	1 863	620	AT5G47780.1	GAUT4	GAUT-A
	GhGAUT08	Gh_A07G1907	A07	74 675 761	74 679 567	1 800	599	AT1G06780.1	GAUT6	GAUT-A
	GhGAUT09	Gh_A07G1602	A07	62 859 121	62 861 400	1 674	557	AT3G02350.1	GAUT9	GAUT-B
	GhGAUT10	Gh_A07G1480	A07	44 247 043	44 249 325	1 776	591	AT3G25140.1	GAUT8	GAUT-B
	GhGAUT11	Gh_A07G0842	A07	14 511 134	14 513 794	1 710	569	AT3G25140.1	GAUT8	GAUT-B
	GhGAUT12	Gh_A07G1344	A07	33 278 890	33 282 504	2 046	681	AT3G61130.1	GAUT1	GAUT-A
	GhGAUT13	Gh_A08G1146	A08	80 396 030	80 399 699	2 019	672	AT2G46480.1	GAUT2	GAUT-A
	GhGAUT14	Gh_A11G1169	A11	14 257 384	14 261 704	1 797	598	AT1G06780.1	GAUT6	GAUT-A
	GhGAUT15	Gh_A11G0310	A11	2 866 274	2 869 499	1 602	533	AT1G18580.1	GAUT11	GAUT-B
	GhGAUT16	Gh_A11G0648	A11	6 318 816	6 322 420	1 602	533	AT3G01040.1	GAUT13	GAUT-C
	GhGAUT17	Gh_A13G0573	A13	13 490 010	13 493 804	2 046	681	AT4G38270.1	GAUT3	GAUT-A
	GhGAUT18	Gh_A13G1199	A13	65 040 755	65 043 553	1 605	534	AT5G54690.1	GAUT12	GAUT-C
	GhGAUT19	Gh_D01G0577	D01	7 904 964	7 913 279	1 605	534	AT5G54690.1	GAUT12	GAUT-C
	GhGAUT20	Gh_D02G1116	D02	31 936 862	31 942 590	1 827	608	AT2G38650.1	GAUT7	GAUT-A
	GhGAUT21	Gh_D04G1424	D04	45 645 539	45 649 073	1 602	533	AT1G18580.1	GAUT11	GAUT-B
	GhGAUT22	Gh_D04G0402	D04	6 351 785	6 357 064	1 674	557	AT3G01040.1	GAUT13	GAUT-C
	GhGAUT23	Gh_D04G0340	D04	5 179 695	5 186 785	1 389	462	AT3G58790.1	GAUT15	GAUT-C
	GhGAUT24	Gh_D05G1691	D05	15 200 861	15 204 140	1 842	613	AT5G47780.1	GAUT4	GAUT-A
	GhGAUT25	Gh_D06G1729	D06	56 469 689	56 473 720	1 863	620	AT5G47780.1	GAUT4	GAUT-A
	GhGAUT26	Gh_D07G2130	D07	51 568 886	51 572 831	1 800	599	AT1G06780.1	GAUT6	GAUT-A
	GhGAUT27	Gh_D07G1799	D07	42 869 876	42 872 172	1 674	557	AT3G02350.1	GAUT9	GAUT-B
	GhGAUT28	Gh_D07G0913	D07	11 891 038	11 893 713	1 710	569	AT3G02350.1	GAUT9	GAUT-B
	GhGAUT29	Gh_D07G1583	D07	30 120 469	30 122 649	1 695	564	AT3G25140.1	GAUT8	GAUT-B
	GhGAUT30	Gh_D07G1453	D07	24 699 109	24 702 694	2 031	676	AT3G61130.1	GAUT1	GAUT-A
	GhGAUT31	Gh_D08G1429	D08	46 983 870	46 990 546	2 235	744	AT2G46480.1	GAUT2	GAUT-A
	GhGAUT32	Gh_D09G2061	D09	47 942 831	47 947 845	1 818	605	AT2G38650.1	GAUT7	GAUT-A
	GhGAUT33	Gh_D11G1324	D11	12 768 969	12 772 925	1 794	597	AT1G06780.1	GAUT6	GAUT-A
	GhGAUT34	Gh_D11G0365	D11	3 115 363	3 118 680	1 602	533	AT1G18580.1	GAUT11	GAUT-B
	GhGAUT35	Gh_D11G0880	D11	7 605 876	7 610 151	2 031	676	AT2G46480.1	GAUT2	GAUT-A
	GhGAUT36	Gh_D11G0760	D11	6 527 861	6 531 464	1 602	533	AT3G01040.1	GAUT13	GAUT-C
	GhGAUT37	Gh_D12G0542	D12	9 891 906	9 894 305	1 614	537	AT3G02350.1	GAUT9	GAUT-B
	GhGAUT38	Gh_D13G0555	D13	7 521 289	7 525 063	2 046	681	AT4G38270.1	GAUT3	GAUT-A
	GhGAUT39	Gh_D13G1495	D13	46 583 202	46 585 967	1 599	532	AT5G54690.1	GAUT12	GAUT-C
	GhGAUT40	Gh_A09G2268	scaffold2280_A09	33 334	38 396	1 821	606	AT2G38650.1	GAUT7	GAUT-A
	GhGAUT41	Gh_A11G3052	scaffold2738_A11	31 739	35 214	2 031	676	AT2G46480.1	GAUT2	GAUT-A
G. raimondii	GrGAUT01	Gorai.001G104800	Chr01	11 739 260	11 742 665	1 713	570	AT3G25140.1	GAUT8	GAUT-B
	GrGAUT02	Gorai.001G172800	Chr01	24 959 043	24 963 513	2 034	677	AT1G18580.1	GAUT11	GAUT-B
	GrGAUT03	Gorai.001G188500	Chr01	30 394 865	30 398 560	1 779	592	AT3G25140.1	GAUT8	GAUT-B
	GrGAUT04	Gorai.001G205700	Chr01	40 061 128	40 063 974	1 677	558	AT3G02350.1	GAUT9	GAUT-B
	GrGAUT05	Gorai.001G243400	Chr01	48 406 329	48 410 709	1 803	600	AT1G06780.1	GAUT6	GAUT-A
	GrGAUT06	Gorai.002G013600	Chr02	881 738	888 088	1 854	617	AT4G38270.1	GAUT3	GAUT-A
	GrGAUT07	Gorai.002G082100	Chr02	10 361 510	10 364 854	1 608	535	AT5G54690.1	GAUT12	GAUT-C
	GrGAUT08	Gorai.004G074600	chr04	8 330 249	8 333 832	1 098	365	AT1G06780.1	GAUT6	GAUT-A
	GrGAUT09	Gorai.004G155600	Chr04	44 036 606	44 041 193	2 022	673	AT2G46480.1	GAUT2	GAUT-A
	GrGAUT10	Gorai.004G219100	Chr04	55 255 869	55 260 007	1 746	581	AT1G06780.1	GAUT6	GAUT-A
	GrGAUT11	Gorai.005G129100	Chr05	31 303 031	31 309 906	1 830	609	AT2G38650.1	GAUT7	GAUT-A
	GrGAUT12	Gorai.006G236100	Chr06	48 377 701	48 383 955	1 833	610	AT2G38650.1	GAUT7	GAUT-A
	GrGAUT13	Gorai.007G040000	Chr07	2 785 971	2 790 164	1 605	534	AT1G18580.1	GAUT11	GAUT-B
	GrGAUT14	Gorai.007G081500	Chr07	5 820 168	5 825 079	1 605	534	AT3G01040.1	GAUT13	GAUT-C
	GrGAUT15	Gorai.007G093500	Chr07	6 832 789	6 837 085	2 034	677	AT2G46480.1	GAUT2	GAUT-A
	GrGAUT16	Gorai.007G142400	Chr07	11 853 941	11 858 955	1 797	598	AT1G06780.1	GAUT6	GAUT-A
	GrGAUT17	Gorai.008G059800	Chr08	9 388 299	9 391 237	1 686	561	AT3G02350.1	GAUT9	GAUT-B
	GrGAUT18	Gorai.010G190800	Chr10	54 465 897	54 470 520	1 866	621	AT2G30575.1	GAUT5	GAUT-A
	GrGAUT19	Gorai.012G042500	Chr12	5 361 960	5 369 902	1 611	536	AT3G58790.1	GAUT15	GAUT-C
	GrGAUT20	Gorai.012G049900	Chr12	6 493 884	6 500 082	1 677	558	AT3G01040.1	GAUT13	GAUT-C
	GrGAUT21	Gorai.012G131400	Chr12	30 042 007	30 046 372	1 605	534	AT1G18580.1	GAUT11	GAUT-B
	GrGAUT22	Gorai.013G063700	Chr13	7 098 252	7 102 442	2 049	682	AT4G38270.1	GAUT3	GAUT-A
	GrGAUT23	Gorai.013G164000	Chr13	44 518 254	44 522 187	1 605	534	AT5G54690.1	GAUT12	GAUT-C

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