Table 1 Fifty-five candidates involved in fiber xylan synthesis in upland cotton
From: Global identification of genes associated with xylan biosynthesis in cotton fiber
Function | Arabidopsis Gene namesa | G.hirsutum Gene ID | Sequence identity /%b | GT family or domain | Referencesc |
|---|---|---|---|---|---|
Backbone | IRX9At2g37090 | Gh_D09G1426 | 61.71 | GT43 | Brown et al. 2007; Peña et al. 2007; Brown et al. 2009; Wu et al. 2010; Jensen et al. 2014; Urbanowicz et al. 2014 |
Gh_A09G1418 | 61.43 | GT43 | |||
IRX9L At1g27600 | Gh_A06G0232 | 62.13 | GT43 | ||
Gh_D01G1084 | 60.05 | GT43 | |||
Gh_D06G2324 | 63.61 | GT43 | |||
IRX10At1g27440/ IRX10L At5g61840 | Gh_D12G1919 | 90.93 | GT47 | ||
Gh_D02G1793 | 90.80 | GT47 | |||
Gh_A03G1353 | 90.55 | GT47 | |||
Gh_D12G1414 | 89.38 | GT47 | |||
Gh_A12G1292 | 87.16 | GT47 | |||
IRX14At4g36890/ IRX14L At5g67230 | Gh_D03G0229 | 69.72 | GT43 | ||
IRX15At3g50220/ IRX15L At5g67210 | Gh_D11G0506 | 70.61 | DUF579 | Brown et al. 2011; Jensen et al. 2011 | |
Gh_A11G0434 | 68.75 | DUF579 | |||
Gh_A11G1800 | 68.71 | DUF579 | |||
Gh_D11G1962 | 69.40 | DUF579 | |||
Gh_D12G0677 | 69.61 | DUF579 | |||
Gh_A12G0675 | 69.03 | DUF579 | |||
Reducing end | FRA8At2g28110/F8H At5g22940 | Gh_A13G2031 | 67.57 | GT47 | Brown et al. 2007; Lee et al. 2007; Lee et al. 2009a; Zhong et al. 2005 |
Gh_D13G2434 | 67.04 | GT47 | |||
PARVUS/GATL1At1g19300 | Gh_A06G0103 | 80.56% | GT8 | ||
Side chains (Glucuronosyltransferases) | GUX1At3g18660 | Gh_A10G0734 | 65.51 | GT8 | Mortimer et al. 2010; Rennie et al. 2012 |
Gh_D10G1036 | 65.51 | GT8 | |||
Gh_A11G0519 | 66.77 | GT8 | |||
Gh_D11G0603 | 66.36 | GT8 | |||
GUX2At4g33330 | Gh_A06G1849 | 62.01 | GT8 | ||
Gh_D06G0142 | 62.12 | GT8 | |||
Gh_D05G1935 | 63.71 | GT8 | |||
Gh_A05G1740 | 63.82 | GT8 | |||
GlcA methyltransferases | GXM1At1g09610/ GXM2At4g09990/ GXM3 At1g338001 | Gh_A01G1163 | 70.61 | DUF579 | Lee et al. 2012 |
Gh_D01G1291 | 69.93 | DUF579 | |||
Gh_D13G1237 | 64.87 | DUF579 | |||
Gh_A13G0989 | 63.80 | DUF579 | |||
Acetylation (acetyltransferases) | ESK1/TBL29At3g55990 | Gh_D04G1287 | 68.50 | DUF231 | Urbanowicz et al. 2014; Zhong et al. 2017 |
Gh_A04G0794 | 68.35 | DUF231 | |||
TBL33At2g40320 | Gh_D06G1766 | 79.34 | DUF231 | ||
Gh_A06G1419 | 78.87 | DUF231 | |||
Gh_D13G0151 | 76.51 | DUF231 | |||
Gh_A13G0130 | 76.51 | DUF231 | |||
TBL3At5g01360 | Gh_A13G2180 | 66.51 | DUF231 | ||
Gh_D13G0974 | 66.35 | DUF231 | |||
Gh_D04G1278 | 66.59 | DUF231 | |||
Gh_A04G0787 | 66.35 | DUF231 | |||
TBL32At3g11030 | Gh_A10G2143 | 63.66 | DUF231 | ||
TBL43 At2G30900 | Gh_A11G2606 | 52.00 | DUF231 | Â | |
TBL41 At3G14850 | Gh_D11G3388 | 57.00 | DUF231 | ||
At5g46340RWA1/At2g34410RWA3/At1g29890RWA4 | Gh_A06G2002 | 82.90 | Casp1 | Lee et al. 2011; Manabe et al. 2011; | |
Gh_D06G2122 | 85.14 | Casp1 | |||
AXY9At3g03210 | Gh_D07G0742 | 40.47 | Casp1 | Schultink et al. 2015 | |
Gh_A07G0663 | 40.18 | Casp1 | |||
Side chain(Arabinosyltransferase) | TaXAT2 (Triticum aestivum, wheat) | Gh_D12G2537 | 39.80 | GT61 | Anders et al. 2012 |
Gh_A12G2720 | 39.71 | GT61 | |||
Unknown function | At5G25820 | Gh_A13G1640 | 46% | GT47 | Â |
Unknown function | At4G32790 | Gh_D13G2004 | 72% | GT47 | |
Unknown function | At4G24910 | Gh_D03G1085 | 51% | DUF579 | |
Unknown function | At4G24910 | Gh_A03G0453 | 57% | DUF579 |